Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR7500319/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  130,337,011
 Normal Paired: 128,157,308 (98.33%)
 Chimeric Paired: 5,244 (0.00%)
 Chimeric Ambiguous: 1,710 (0.00%)
 Unmapped: 2,172,749 (1.67%)
 Ligation Motif Present: 10,703 (0.01%)
Alignable (Normal+Chimeric Paired): 128,162,552 (98.33%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-23T12:09:10,622]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 41,935,142 (32.17%)
PCR Duplicates: 86,227,410 (66.16%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 44,414,388
Intra-fragment Reads: 23,800,703 (18.26% / 56.76%)
Below MAPQ Threshold: 4,826,287 (3.70% / 11.51%)
Hi-C Contacts: 13,308,152 (10.21% / 31.74%)
 Ligation Motif Present: 4,110  (0.00% / 0.01%)
 3' Bias (Long Range): 83% - 17%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 2,054,714  (1.58% / 4.90%)
Intra-chromosomal: 11,253,438  (8.63% / 26.84%)
Short Range (<20Kb): 6,908,000  (5.30% / 16.47%)
Long Range (>20Kb): 4,345,430  (3.33% / 10.36%)